Bioinformatics analysis of predicted target genes of miRNA-143 and miRNA-221 in elderly primary rectal carcinoma
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摘要: 目的 探讨miRNA-143和miRNA-221在老年直肠癌中的诊断价值及临床意义。 方法 收集2015年9月-2016年12月蚌埠医学院第一附属医院老年直肠癌患者标本50例和健康人群标本30例,使用高通量测序技术、荧光定量PCR检测验证直肠癌及正常组织中miRNA差异表达;Pearson检验对miRNA-143和miRNA-221进行相关性分析;miRBase数据库预测两者miRNA的靶基因;R 3.4.0软件绘制差异miRNA热图聚类图,miRNet数据库和cytoscape 3.5.1绘制miRNA与mRNA表达调控网络。 结果 对比正常组织,miRNA-143和miRNA-221在老年原发性直肠癌组织中均下调(P<0.001,P=0.009),两者表达水平呈正相关(r=0.517,P=0.003)。GO功能注释主要富集于MAPKK活性、干细胞发育、STAT蛋白酪氨酸磷酸化调控、蛋白质磷酸化氨基酸结合、酪氨酸磷酸化肽、调节脂质激酶活性、磷蛋白聚合、核转录mRNA聚A尾缩短等生物学过程和分子功能(P<0.01);KEGG信号通路富集主要涉及TP53基因调节细胞死亡基因转录、VEGF信号通路、IL-4信号通路、抑瘤素M信号通路(P<0.01)。调控网络表明miRNA-143和miRNA-221之间有少许靶基因重合,两者之间具有协同作用。 结论 miRNA-143和miRNA-221作为直肠癌抑癌因子,为临床老年直肠癌的诊断提供一定的临床意义。Abstract: Objective To explore the diagnostic value and clinical significance of miRNA-143 and miRNA-221 in older patients with rectal cancer. Methods Fifty older patients with rectal cancer were analyzed and 30 healthy individuals served as control from September 1, 2015 to December 30, 2016. We used high-throughput sequencing and fluorescence quantitative RT-PCR to detect and verify the miRNAs differential expression in the above samples. Pearson test was used to analyze the correlation between miRNA-143 and miRNA-221. The two miRNAs' target genes were predicted using the miRBase database. We used R 3.4.0 software to draw differential miRNA heat map clustering graphs. MiRNet database and cytoscape 3.5.1 were used to plot the miRNA and mRNA expression regulatory network. Results Compared with normal tissues, miRNA-143 and miRNA-221 were both down-regulated in elderly primary rectal cancer tissues (P<0.001, P=0.009), and their expression levels were positively correlated (r=0.517, P=0.003). GO functional annotation mainly enriched in biological process and molecular function, for instance, stem cell development, MAPKK activity, STAT protein tyrosine phosphorylation regulation, protein phosphorylation, tyrosine phosphorylation of amino acid binding peptide, regulating lipid kinase activity, polymerization, poly nuclear phosphoprotein mRNA A tail shortened (P<0.01). KEGG pathway analysis involved TP53 genes regulating cell death gene transcription, VEGF signaling pathway, IL-4 signaling pathway, oncostatin M signaling (P<0.01). The regulatory network indicates that there are a few target genes overlap between miRNA-143 and miRNA-221, and the two have synergistic effects. Conclusion As tumor suppressor factors of rectal cancer, miRNA-143 and miRNA-221 provide certain clinical significance for the diagnosis of senile rectal cancer.
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Key words:
- Rectal cancer /
- High-throughput sequencing /
- GO annotation /
- KEGG pathway /
- Regulatory network
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